Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013215.1 Corchorus capsularis cultivar CVL-1 contig13236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48203

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4748--4804
20
2.9
19
80
15
55
70
0
0
29
0.88
4768--4797
12
2.5
12
94
0
51
70
0
0
30
0.88
5698--5727
12
2.5
12
94
0
51
30
0
0
70
0.88
5704--5744
19
2.2
19
83
12
50
29
0
0
70
0.87
6237--6273
18
2.1
18
94
0
65
45
18
21
13
1.84
7478--7504
13
2.1
13
100
0
54
25
0
7
66
1.17
10202--10313
13
8.2
13
71
21
54
41
3
0
54
1.24
10205--10334
32
4.1
32
70
20
110
40
3
0
54
1.24
10196--10311
45
2.5
46
77
17
134
42
3
0
53
1.23
10277--10324
16
2.8
17
87
9
62
47
0
0
52
1.00
10278--10319
12
3.6
12
78
18
52
50
0
0
50
1.00
10278--10323
20
2.3
20
85
3
58
50
0
0
50
1.00
11848--11884
7
5.1
7
87
6
56
83
0
16
0
0.64
11847--11882
15
2.4
15
95
0
63
86
0
13
0
0.58
18113--18156
7
6.3
7
100
0
88
0
13
13
72
1.12
19024--19096
30
2.5
29
84
6
94
49
19
9
21
1.76
20355--20399
19
2.4
19
88
3
74
62
4
4
28
1.34
21921--22027
29
3.6
29
77
8
99
36
15
29
17
1.92
21921--22000
29
2.7
30
82
7
101
35
15
31
18
1.92
25112--25294
101
1.8
102
90
1
296
42
13
13
31
1.83
28199--28305
53
2.0
53
98
0
205
26
10
13
50
1.73
28215--28299
26
3.2
26
64
15
66
25
11
14
48
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35050--35148
48
2.1
48
96
0
180
46
12
9
32
1.72
42792--42922
31
4.4
31
74
14
123
16
27
24
31
1.97
42841--42891
24
2.1
24
88
0
75
15
27
25
31
1.96
43264--43565
12
25.8
12
64
16
89
37
0
22
39
1.61
43311--43539
57
4.2
57
80
10
282
38
0
21
38
1.60
43264--43412
46
3.2
46
90
1
235
34
0
23
41
1.55
45758--45868
55
2.0
55
98
0
213
26
7
26
40
1.81
46663--46687
12
2.1
12
100
0
50
48
0
0
52
1.00
46994--47077
41
2.0
42
95
2
152
47
5
4
41
1.49
47633--47721
16
5.6
16
82
5
108
32
37
21
8
1.85
47624--47718
48
2.0
48
87
0
136
30
41
20
8
1.81

Tables:   1

The End!