Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013218.1 Corchorus capsularis cultivar CVL-1 contig13239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40429

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
389--422
16
2.1
16
88
0
50
44
0
2
52
1.16
1084--1110
3
9.0
3
100
0
54
33
0
0
66
0.92
3736--3788
27
2.0
27
88
0
79
9
33
5
50
1.58
7954--8009
27
2.1
27
86
6
78
10
35
5
48
1.61
9188--9230
21
2.0
22
86
4
61
16
0
32
51
1.45
10223--10265
21
2.0
22
86
4
61
16
0
32
51
1.45
10262--10311
25
2.0
25
96
0
91
38
20
30
12
1.88
10514--10563
25
2.0
25
100
0
100
36
0
20
44
1.52
23717--23762
23
2.0
23
100
0
92
21
21
0
56
1.42
36712--36841
65
2.0
65
100
0
260
32
10
20
36
1.87
37978--38067
30
3.0
32
73
16
93
36
1
36
25
1.64

Tables:   1

The End!