Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013226.1 Corchorus capsularis cultivar CVL-1 contig13247, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66387

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8398--8472
33
2.3
33
88
0
114
20
37
29
13
1.90
8961--8988
3
9.3
3
100
0
56
35
0
0
64
0.94
11978--12051
28
2.6
28
78
4
76
36
9
14
39
1.79
12806--12845
21
1.9
21
85
10
55
25
42
2
30
1.68
17394--17457
32
2.1
30
82
5
74
37
15
9
37
1.80
18341--18566
114
2.0
113
88
0
335
25
22
13
38
1.91
26195--26232
17
2.2
18
85
4
51
18
13
5
63
1.48
27840--27885
23
2.0
22
83
12
56
47
6
10
34
1.64
36366--36422
25
2.3
25
81
6
71
54
26
3
15
1.57
36911--36971
27
2.3
27
94
0
104
14
4
40
39
1.68
39004--39094
38
2.4
37
80
8
121
21
5
24
48
1.71
39155--39254
49
2.0
49
96
0
182
9
13
33
45
1.74
40890--40985
27
3.3
27
77
16
111
12
6
36
44
1.67
41125--41153
2
14.5
2
100
0
58
51
0
0
48
1.00
42506--42568
21
2.9
22
83
9
76
34
12
12
39
1.82
42507--42602
22
4.4
22
80
5
79
37
13
11
37
1.81
42667--42708
22
1.9
22
90
0
66
38
16
11
33
1.86
42700--42742
22
2.0
22
85
0
59
32
18
13
34
1.90
42778--42832
22
2.5
23
88
8
87
36
12
9
41
1.75
43765--43824
28
2.1
28
90
0
93
38
5
15
41
1.68
43884--43949
31
2.1
31
94
0
114
28
16
6
48
1.70
44081--44145
30
2.1
31
91
2
105
26
20
6
47
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45545--45574
14
2.1
15
93
6
53
0
0
13
86
0.57
46269--46297
2
14.5
2
100
0
58
48
0
0
51
1.00
52719--52774
16
3.8
16
75
15
66
41
5
5
48
1.49
55616--55660
22
2.0
22
100
0
90
20
13
13
53
1.72
56400--56448
25
2.0
25
91
0
80
26
6
8
59
1.50
57200--57230
2
15.5
2
100
0
62
51
0
0
48
1.00
57357--57417
19
3.1
19
77
9
68
40
11
14
32
1.82
57353--57416
21
3.1
21
77
8
78
40
10
15
32
1.82
65130--65164
2
17.5
2
100
0
70
48
0
0
51
1.00
66282--66322
15
2.7
15
88
0
64
17
2
58
21
1.50

Tables:   1

The End!