Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013228.1 Corchorus capsularis cultivar CVL-1 contig13249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40172

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1728--1871
31
4.6
31
80
3
175
16
19
25
38
1.92
1709--1871
62
2.6
62
88
0
236
18
19
25
36
1.94
1981--2053
31
2.4
31
95
0
128
35
16
27
20
1.94
2400--2434
2
18.0
2
94
5
63
48
0
0
51
1.00
3914--3950
19
2.0
19
94
5
67
37
0
0
62
0.96
3920--3961
19
2.2
19
86
0
57
42
2
0
54
1.13
7326--7358
12
2.8
12
90
0
57
0
57
0
42
0.98
9016--9084
22
3.1
22
85
4
86
40
13
11
34
1.80
9073--9152
23
3.5
23
82
1
99
40
11
6
42
1.66
9027--9321
22
13.6
22
68
16
127
35
12
9
42
1.74
9218--9339
66
1.9
64
81
6
147
34
13
9
42
1.77
9446--9637
22
8.6
22
72
5
91
34
13
11
40
1.81
9814--9872
22
2.7
22
80
15
68
37
13
10
38
1.79
9908--10047
22
6.3
22
73
8
86
38
18
9
33
1.83
9963--10047
22
3.9
22
78
3
91
37
15
10
36
1.82
10215--10252
20
2.0
20
85
15
53
63
5
5
26
1.37
10570--10630
32
1.9
32
87
9
90
49
3
18
29
1.63
19646--19681
3
12.0
3
93
0
63
63
0
36
0
0.94
26745--26802
30
1.9
30
85
0
80
36
22
12
29
1.90
27773--27835
31
2.0
31
100
0
126
41
19
0
39
1.51
33558--33583
12
2.2
12
100
0
52
23
15
26
34
1.94
35068--35102
15
2.3
15
100
0
70
42
8
25
22
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38115--38152
18
2.0
20
90
10
62
36
5
31
26
1.79

Tables:   1

The End!