Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013231.1 Corchorus capsularis cultivar CVL-1 contig13252, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33737

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3525--3591
31
2.2
31
89
5
102
49
11
16
22
1.78
3738--3877
31
4.6
31
81
4
151
31
15
14
39
1.87
3765--3877
60
1.9
59
87
1
163
30
15
15
38
1.88
4797--4840
3
14.7
3
95
0
61
27
0
6
65
1.17
4884--4991
31
3.5
31
79
12
107
35
12
17
35
1.87
5110--5176
31
2.2
31
89
5
102
20
19
13
46
1.83
8480--9420
466
2.0
466
98
0
1810
35
20
18
25
1.95
9413--9439
8
3.4
8
100
0
54
22
0
25
51
1.48
14115--14540
103
4.0
104
79
12
418
38
27
6
27
1.80
14928--15074
72
2.0
72
100
0
294
20
27
36
15
1.93
26845--27015
57
3.0
57
100
0
342
26
14
17
42
1.87
27266--27380
57
2.0
57
100
0
230
31
20
8
39
1.83
27837--28029
97
2.0
100
84
6
259
26
12
13
46
1.79
28074--28127
27
2.0
27
100
0
108
51
11
22
14
1.73
29598--29678
38
2.1
38
97
0
153
40
8
24
25
1.84
31135--31219
27
3.1
27
93
0
143
42
22
30
4
1.74

Tables:   1

The End!