Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013235.1 Corchorus capsularis cultivar CVL-1 contig13256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25742

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1424--1575
42
3.6
42
98
0
288
38
14
18
28
1.90
2928--2952
1
25.0
1
100
0
50
0
0
0
100
0.00
4764--4791
4
7.0
4
100
0
56
75
0
0
25
0.81
7408--7703
109
2.7
109
90
4
441
49
1
11
37
1.48
8118--8212
31
3.2
28
75
8
91
29
27
25
17
1.98
10262--10519
66
4.0
63
80
8
277
21
25
16
36
1.94
13508--13663
74
2.1
73
92
3
260
21
29
9
39
1.85
20752--20800
15
3.2
15
91
2
71
22
16
34
26
1.95
22077--22120
22
2.0
22
86
8
63
40
11
4
43
1.61
22136--22681
22
24.6
22
66
14
137
35
15
10
38
1.82
22811--23027
22
10.0
22
71
11
126
30
16
10
41
1.82
22811--23010
43
4.6
42
73
13
147
31
16
10
42
1.82
22780--23027
22
11.5
22
71
11
120
31
15
10
41
1.81
23033--23177
22
6.7
20
67
20
62
35
18
7
37
1.79
23208--23273
22
2.9
22
79
4
69
39
21
7
31
1.81
23460--23508
15
3.5
15
68
21
52
57
0
10
32
1.32
23534--23596
31
2.1
28
85
8
81
46
3
20
30
1.66

Tables:   1

The End!