genome.fa.s13239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013239.1 Corchorus capsularis cultivar CVL-1 contig13260, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118797

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6680--6710	7	4.6	7	96	4	55	0	16	9	74	1.07
6674--6710	14	2.7	13	88	12	56	0	16	8	75	1.02
8341--8374	14	2.4	14	95	0	59	23	11	14	50	1.76
10592--10690	31	3.2	30	67	16	76	22	12	19	46	1.82
12021--12165	74	2.0	74	94	2	256	40	6	29	23	1.81
15600--15629	2	15.0	2	100	0	60	50	0	0	50	1.00
15843--15883	13	3.1	13	96	3	73	31	2	21	43	1.66
19633--19696	22	2.8	23	80	2	67	35	17	10	35	1.85
19680--19742	23	2.7	23	85	4	74	42	12	3	41	1.59
19658--19886	22	10.6	22	72	10	116	34	14	8	42	1.76
19901--19949	20	2.5	20	89	0	71	28	16	12	42	1.84
20142--20243	22	4.6	23	78	10	106	38	13	9	38	1.78
20144--20260	21	5.4	22	69	19	68	36	15	8	39	1.78
20142--20422	22	12.6	22	69	17	79	35	17	9	37	1.82
20458--20633	22	7.9	22	74	11	99	37	19	9	33	1.84
20465--20609	44	3.2	44	82	9	161	37	19	10	33	1.86
20807--20844	19	2.0	20	85	15	53	63	2	5	28	1.30
21531--21590	29	2.1	29	87	0	84	45	10	23	21	1.82
21865--21909	22	2.0	22	100	0	90	17	8	13	60	1.58
23098--23132	18	1.9	18	88	0	52	5	8	5	80	1.03
25808--25894	43	2.0	43	88	0	129	37	9	18	34	1.83
30131--30160	2	15.5	2	93	6	53	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33625--33702	23	3.4	23	74	13	88	5	29	1	64	1.23
33605--33707	46	2.2	47	94	3	183	3	26	1	67	1.18
35033--35102	31	2.3	31	87	0	95	21	22	24	31	1.98
35049--35131	31	2.7	31	90	0	121	20	19	22	37	1.94
35081--35183	53	1.9	53	86	0	143	18	18	25	37	1.93
36009--36048	2	20.5	2	89	5	64	47	0	2	50	1.14
36030--36104	39	1.9	39	94	5	134	32	2	9	56	1.45
52828--53388	22	25.7	22	69	11	185	36	14	10	39	1.80
53094--53197	23	4.6	23	81	10	101	39	13	8	38	1.75
53094--53219	45	2.8	45	79	12	127	38	13	8	39	1.76
53376--53422	19	2.4	20	82	7	60	25	17	8	48	1.74
53498--53690	44	4.4	44	74	12	148	34	13	9	43	1.76
53541--53669	66	2.0	66	81	3	152	34	13	10	41	1.79
53495--53667	22	7.9	21	70	10	89	34	13	9	41	1.78
53497--53690	88	2.2	88	80	6	207	34	13	9	42	1.77
53652--53769	21	5.4	21	68	15	62	33	12	10	43	1.77
53775--53829	22	2.6	21	77	11	58	38	16	5	40	1.72
53790--53840	22	2.3	22	82	0	66	41	19	7	31	1.80
53846--53904	22	2.7	22	79	10	66	37	13	10	38	1.79
53940--54104	22	7.3	22	75	10	100	37	20	10	31	1.87
53994--54059	25	2.9	22	88	6	87	34	16	15	33	1.90
54270--54307	19	2.0	20	85	15	53	63	2	5	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55325--55359	17	2.1	17	94	0	61	42	20	11	25	1.85
56635--56699	3	21.7	3	96	0	121	33	1	0	64	1.03
57892--57973	37	2.2	37	80	4	94	31	32	15	19	1.93
58199--58244	24	1.9	24	100	0	92	32	15	13	39	1.85
60621--60645	13	1.9	13	100	0	50	36	16	24	24	1.94
60971--61056	29	2.9	29	83	8	111	18	30	16	34	1.93
62392--62428	17	2.2	17	95	0	65	37	27	5	29	1.79
67006--67090	29	2.9	28	86	8	116	32	16	31	18	1.94
79068--79100	15	2.2	15	100	0	66	36	36	0	27	1.57
80775--80799	13	1.9	13	100	0	50	48	12	32	8	1.69
86163--86188	13	2.0	13	100	0	52	38	23	0	38	1.55
93527--93551	1	25.0	1	100	0	50	100	0	0	0	0.00
105215--105373	45	3.5	45	90	1	255	24	26	17	31	1.97
107028--107397	40	9.2	40	92	2	526	34	5	28	31	1.81
107028--107397	161	2.3	161	88	2	573	34	5	28	31	1.81
107028--107384	121	3.0	120	89	2	554	33	5	28	31	1.81
108363--108408	20	2.3	20	88	3	67	28	19	17	34	1.94
111137--111210	20	3.7	20	67	21	55	41	14	37	5	1.69
111079--111206	42	2.9	43	83	10	152	39	16	37	7	1.76
111168--111619	52	8.8	52	91	1	676	32	27	35	4	1.77
111199--111619	155	2.7	155	91	2	668	32	28	35	4	1.77
111756--111787	6	5.3	6	92	0	55	37	15	46	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111863--111954	4	23.0	4	86	0	94	39	9	51	0	1.35
111863--111954	20	4.5	20	90	5	139	39	9	51	0	1.35
111863--111954	24	3.8	24	88	0	130	39	9	51	0	1.35
112970--113002	14	2.4	14	90	5	50	63	0	0	36	0.95
115617--115669	27	1.9	28	88	3	81	49	3	11	35	1.57

Tables:   1

The End!