Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001324.1 Corchorus capsularis cultivar CVL-1 contig01324, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7596
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:4369 original size:13 final size:12

Alignment explanation


    Indices: 4342--4380  Score: 51
    Period size: 12  Copynumber: 3.0  Consensus size: 12

       4332 AAAGAGCTCC

                          
       4342 AAAAAAAAGAGAGG
          1 AAAAAAAA-A-AGG

                         
       4356 AGAAAAAAAAAGG
          1 A-AAAAAAAAAGG

                        
       4369 AAAAAAAAAAGG
          1 AAAAAAAAAAGG

       4381 GTCACGCTAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  12   11  0.46
  13    4  0.17
  14    2  0.08
  15    7  0.29

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (12 bp):   
AAAAAAAAAAGG
Done.