Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013241.1 Corchorus capsularis cultivar CVL-1 contig13262, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54153

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
234--312
28
2.7
30
84
5
90
29
17
11
41
1.84
424--518
31
3.0
31
86
8
138
41
10
14
33
1.81
431--518
30
2.8
31
89
6
133
43
10
14
31
1.79
714--763
13
3.8
13
73
19
50
56
0
10
34
1.33
1224--1273
13
3.8
13
73
19
50
34
10
0
56
1.33
1071--1415
179
1.9
178
88
1
521
37
6
2
53
1.39
1470--1564
31
3.1
31
95
4
167
32
14
12
40
1.84
1676--1730
27
2.0
27
85
0
74
43
12
16
27
1.84
7202--7241
20
2.0
20
95
0
71
32
17
0
50
1.47
7813--7871
18
3.5
17
75
11
50
33
50
5
10
1.58
7810--7982
81
2.1
83
86
3
251
30
47
8
14
1.73
8010--8093
33
2.5
33
96
0
150
21
47
17
13
1.81
8068--8270
69
2.9
69
90
5
318
35
43
9
11
1.74
8437--8490
24
2.2
24
96
0
99
40
24
16
18
1.90
8885--8939
28
2.0
28
100
0
110
54
10
12
21
1.68
11822--11854
12
2.8
12
100
0
66
9
66
15
9
1.43
12202--12226
3
8.3
3
100
0
50
32
68
0
0
0.90
12468--12536
12
5.8
12
86
3
95
39
33
0
27
1.57
17031--17211
55
3.3
55
75
9
206
29
17
18
33
1.94
18856--18892
2
19.0
2
84
15
51
45
2
0
51
1.15
18856--18892
7
4.8
8
84
15
51
45
2
0
51
1.15
18856--18894
11
3.5
11
80
13
53
46
2
0
51
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18860--18892
13
2.5
13
95
0
57
45
3
0
51
1.16
19567--19594
14
2.0
14
100
0
56
50
7
0
42
1.30
19568--19605
14
2.7
14
88
8
51
52
5
0
42
1.24
24919--24953
5
6.8
5
90
3
52
5
14
20
60
1.54
27279--27360
41
2.0
41
97
0
155
19
20
14
45
1.85
36568--36593
11
2.4
11
100
0
52
38
30
7
23
1.83
39855--40312
242
1.9
237
91
2
754
34
9
13
42
1.77
40388--40457
6
11.5
6
86
8
79
20
0
52
27
1.46
40768--40797
7
4.3
7
100
0
60
26
13
30
30
1.94
41453--41515
29
2.2
28
80
8
72
22
22
11
44
1.84
41605--41664
31
2.0
31
86
3
86
40
10
21
28
1.85
41869--41975
42
2.5
42
80
3
126
21
37
8
32
1.84
53639--53684
19
2.3
20
92
3
76
28
13
17
41
1.86
53705--53734
16
1.9
15
93
6
51
80
6
6
6
1.04

Tables:   1

The End!