Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013243.1 Corchorus capsularis cultivar CVL-1 contig13264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126594

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3012--3041
15
2.0
15
93
0
51
20
36
16
26
1.93
15978--16007
2
15.0
2
100
0
60
50
0
0
50
1.00
26120--26184
34
1.9
34
93
0
112
18
9
15
56
1.65
30430--30482
18
2.9
18
91
0
88
0
37
11
50
1.38
30430--30482
27
2.0
27
88
0
79
0
37
11
50
1.38
30430--30473
9
4.9
9
94
0
79
0
40
11
47
1.39
32109--32134
13
2.0
13
100
0
52
46
7
0
46
1.31
33987--34050
32
2.0
32
100
0
128
25
9
15
50
1.74
44899--44945
24
2.0
24
100
0
94
55
0
6
38
1.26
44849--45005
84
1.9
82
81
10
192
47
1
4
46
1.33
46175--46203
11
2.5
12
88
11
51
51
6
0
41
1.28
48412--48517
31
3.5
29
72
14
90
28
18
16
35
1.93
48674--48805
22
6.0
23
70
8
78
40
13
8
37
1.75
52516--52593
6
13.0
6
97
0
138
30
33
33
2
1.72
55711--55778
29
2.3
29
82
0
82
19
5
29
45
1.73
57958--58041
39
2.2
39
100
0
168
35
26
10
27
1.89
63377--63410
4
8.2
4
90
3
50
23
2
0
73
0.97
77674--77719
18
2.6
17
86
6
74
47
8
10
32
1.69
90954--91290
84
4.0
84
97
0
584
32
29
21
16
1.95
92406--92454
24
2.0
24
96
0
89
34
14
20
30
1.92
95362--95401
15
2.7
15
84
0
53
35
27
7
30
1.84
95362--95396
18
1.9
18
94
0
61
34
25
8
31
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95878--95911
6
5.7
6
90
10
52
0
0
11
88
0.52
95878--95911
13
2.8
12
87
12
52
0
0
11
88
0.52
102300--102380
41
2.0
41
90
0
126
41
17
12
28
1.85
102719--102751
16
2.1
17
88
11
52
18
0
18
63
1.31
106731--106918
41
4.5
41
81
9
225
28
12
20
38
1.89
106740--106924
46
4.3
46
75
19
200
29
11
19
38
1.87
107216--107249
16
2.1
16
94
0
59
14
23
17
44
1.86
108809--108842
16
2.1
16
100
0
68
47
17
23
11
1.81
109186--109310
45
3.1
45
60
31
109
39
22
11
27
1.88
109183--109332
75
2.0
75
100
0
300
40
22
10
26
1.87
118934--118966
17
2.0
17
88
5
50
3
15
51
30
1.58
124500--124619
58
2.1
58
100
0
240
43
11
26
18
1.84

Tables:   1

The End!