Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013244.1 Corchorus capsularis cultivar CVL-1 contig13265, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40783

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1129--1162
14
2.4
14
90
9
52
41
8
2
47
1.50
1396--1429
15
2.3
15
94
0
59
29
11
8
50
1.69
1892--1929
11
3.5
11
89
10
51
39
0
2
57
1.12
10891--10950
30
2.0
30
83
6
77
16
30
15
38
1.89
11204--11332
48
2.7
48
82
2
152
17
30
10
41
1.82
13032--13272
120
2.0
120
100
0
482
35
14
16
33
1.90
23063--23095
17
2.0
17
88
5
50
54
0
0
45
0.99
23771--23834
31
2.1
31
91
5
105
29
20
4
45
1.71
23777--23841
29
2.1
31
88
8
98
33
16
4
44
1.69
24196--24582
22
17.4
22
68
13
89
39
8
16
35
1.79
24342--24425
21
3.7
24
82
13
90
42
10
11
34
1.76
24450--24555
22
4.8
22
75
4
90
40
7
16
35
1.76
24684--24954
22
12.4
22
74
13
138
39
8
15
36
1.79
24684--24780
43
2.2
44
87
1
133
39
9
11
40
1.73
24829--25110
22
12.7
23
72
10
117
37
10
14
36
1.81
24829--24954
45
2.8
45
82
8
141
38
9
14
37
1.78
25077--25120
22
2.0
22
86
0
61
45
11
15
27
1.81
33006--33034
3
9.7
3
100
0
58
65
0
0
34
0.93
33904--33929
12
2.2
12
100
0
52
23
0
15
61
1.33
36228--36259
12
2.7
12
95
0
55
59
18
0
21
1.38
36225--36262
12
2.8
14
80
19
53
57
18
0
23
1.40
38425--38457
2
16.5
2
100
0
66
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39473--39517
21
2.1
22
87
4
65
17
35
8
37
1.81
39587--39645
25
2.4
25
91
5
95
35
23
0
40
1.55
39655--39687
15
2.2
15
100
0
66
51
12
0
36
1.39
39656--39711
26
2.2
26
83
6
69
53
10
1
33
1.46
39655--39711
15
4.1
14
78
17
57
52
10
1
35
1.46
39808--39883
33
2.3
33
93
4
127
15
38
30
15
1.89

Tables:   1

The End!