Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013246.1 Corchorus capsularis cultivar CVL-1 contig13267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33214

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5362--5438
24
3.2
24
83
0
100
3
41
6
48
1.47
10999--11115
58
2.0
58
98
1
225
52
7
17
22
1.69
16646--16806
78
2.1
78
91
0
259
50
0
12
37
1.40
17562--17610
24
2.0
24
100
0
98
34
8
20
36
1.82
18262--18320
3
19.7
3
84
6
75
28
33
3
33
1.74
18249--18306
27
2.1
27
93
0
98
27
29
8
34
1.87
22348--22909
279
2.0
280
86
8
782
34
14
13
37
1.86
24032--24090
30
1.9
31
89
3
93
33
18
3
44
1.67
24032--24097
31
2.1
31
86
5
89
34
16
4
43
1.68
24127--24164
19
2.0
19
100
0
76
36
5
0
57
1.21
24133--24174
19
2.3
19
83
4
50
28
11
0
59
1.33
24208--24391
22
8.3
22
77
11
169
33
9
19
38
1.83
24209--25371
44
26.3
44
68
16
184
37
9
16
36
1.81
24423--25418
22
44.9
22
68
14
225
38
9
16
36
1.80
25114--25238
23
5.5
23
86
2
155
37
7
16
39
1.76
25282--25369
45
2.0
44
84
6
115
34
13
15
36
1.87
24969--25505
22
24.5
22
70
11
198
39
9
14
36
1.79
27458--27496
12
3.2
12
82
13
53
51
17
7
23
1.71
30656--30681
13
2.0
13
100
0
52
23
23
0
53
1.46
31513--31546
3
11.3
3
100
0
68
64
0
0
35
0.94

Tables:   1

The End!