Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013251.1 Corchorus capsularis cultivar CVL-1 contig13272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23260
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29


Found at i:13801 original size:27 final size:27

Alignment explanation


    Indices: 13764--13818  Score: 69
    Period size: 27  Copynumber: 2.0  Consensus size: 27

      13754 CCTTTTTTAA

                                         
      13764 AAAAACATATTTCTAA-ATTGCCATTATT
          1 AAAAACATATTT-TAATATT-CCATTATT

                                        
      13792 AAAAA-ATATTTTAATTATTCCATTATT
          1 AAAAACATATTTTAA-TATTCCATTATT

      13819 TTAATAATGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
  26    3  0.12
  27   14  0.56
  28    8  0.32

ACGTcount: A:0.44, C:0.11, G:0.02, T:0.44


Consensus pattern (27 bp):   
AAAAACATATTTTAATATTCCATTATT
Done.