Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013253.1 Corchorus capsularis cultivar CVL-1 contig13274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43651

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1772--1829
29
2.0
29
93
3
98
22
20
13
43
1.87
1995--2066
29
2.4
29
86
6
92
45
16
16
20
1.85
4229--4296
33
2.1
33
91
0
109
27
26
11
33
1.91
12435--12464
2
15.0
2
100
0
60
50
0
0
50
1.00
15042--15067
2
13.0
2
100
0
52
50
0
0
50
1.00
38197--38280
30
2.7
31
83
5
100
21
19
22
36
1.95
38209--38282
31
2.4
30
90
2
112
21
20
24
33
1.97
38865--38908
21
2.1
21
91
0
70
22
31
11
34
1.90
38907--38950
14
2.9
15
83
13
54
18
27
2
52
1.57
38993--39106
33
3.5
32
81
8
122
9
38
39
12
1.76
39209--39271
34
1.9
32
90
6
99
12
33
38
15
1.86
39211--39282
32
2.2
34
85
5
94
12
33
37
16
1.86
40097--40140
21
2.2
19
84
8
52
50
27
0
22
1.50
43331--43377
24
2.0
24
95
0
85
27
23
12
36
1.91

Tables:   1

The End!