Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013257.1 Corchorus capsularis cultivar CVL-1 contig13278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14779

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85--152
26
2.6
26
86
4
93
35
2
8
52
1.47
161--220
25
2.5
25
86
5
79
43
0
20
36
1.52
2192--2245
5
12.0
5
92
7
66
42
0
35
22
1.54
2189--2246
4
13.2
4
89
7
62
44
0
32
22
1.53
4066--4133
31
2.2
32
84
7
86
36
8
26
27
1.86
9537--9623
45
2.0
44
88
6
131
37
10
13
37
1.79
9541--10003
22
20.7
22
67
13
158
35
9
15
39
1.81
9834--9892
23
2.6
22
84
5
73
45
10
8
35
1.68
10146--10211
31
2.1
31
88
5
98
27
19
6
46
1.73
10381--10418
19
2.0
20
85
15
53
28
5
2
63
1.30
10591--10711
44
2.7
43
82
5
127
35
11
17
35
1.86
10591--10773
22
8.2
23
71
11
87
32
10
18
38
1.85
10809--11560
44
17.8
42
65
19
193
40
9
16
34
1.80
10809--10947
22
6.4
22
73
13
101
38
7
17
35
1.80
10970--11202
22
10.6
22
72
12
149
43
9
14
32
1.77
11283--11352
19
3.5
20
80
7
70
42
10
17
30
1.81
11358--11560
22
9.5
22
74
9
136
41
8
14
34
1.77
11316--11560
125
2.0
124
82
4
305
41
8
15
34
1.77
11525--11568
22
2.0
22
95
0
79
36
9
15
38
1.80
11710--11816
22
4.9
22
70
8
74
44
8
13
33
1.73
11830--11873
22
2.0
22
86
8
63
38
4
11
45
1.61

Tables:   1

The End!