Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013259.1 Corchorus capsularis cultivar CVL-1 contig13280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81054

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11305--11402
50
2.0
49
85
2
133
17
11
21
50
1.77
19680--19716
19
1.9
19
94
0
65
29
18
13
37
1.90
35500--35524
13
1.9
13
100
0
50
24
8
0
68
1.16
35261--37432
332
6.4
329
75
11
1567
37
15
13
33
1.87
38555--38579
2
12.5
2
100
0
50
0
52
0
48
1.00
41747--41776
15
1.9
16
93
6
53
53
3
0
43
1.17
50033--50091
27
2.2
27
100
0
118
33
8
6
50
1.59
53368--53731
157
2.3
155
79
8
393
34
20
15
29
1.93
59076--59116
14
2.9
14
88
0
64
46
4
0
48
1.23
59085--59132
17
2.9
17
81
9
55
47
2
0
50
1.12
59797--59997
99
2.0
99
99
0
393
48
13
11
26
1.77
64335--64374
20
2.0
20
100
0
80
5
20
10
65
1.42
65567--65603
13
2.8
13
87
0
56
16
37
8
37
1.78
65602--65685
40
2.2
38
89
4
123
41
17
11
28
1.85
68214--68331
45
2.6
45
89
2
166
31
29
14
24
1.94
68307--68353
24
2.0
24
100
0
94
38
17
12
31
1.87
69773--69814
2
22.0
2
85
9
61
52
2
0
45
1.13
69773--69814
21
2.0
21
95
0
75
52
2
0
45
1.13
70403--70459
29
2.0
29
86
6
80
42
15
8
33
1.78

Tables:   1

The End!