Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013260.1 Corchorus capsularis cultivar CVL-1 contig13281, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123542

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3614--4958
455
3.0
454
94
0
2298
33
24
17
24
1.96
7115--7163
15
3.3
15
73
21
57
57
6
0
36
1.24
15963--16258
159
1.9
159
89
2
461
35
13
21
29
1.91
19455--19480
11
2.4
11
100
0
52
50
0
0
50
1.00
19923--19964
22
1.9
22
85
0
57
52
4
0
42
1.22
23002--23051
25
2.0
25
92
7
84
48
4
8
40
1.51
23297--23336
10
3.9
10
93
3
62
50
0
15
35
1.44
34176--34252
30
2.7
28
80
13
86
49
18
0
32
1.48
34169--34246
26
2.8
26
81
11
84
50
15
0
34
1.45
39668--39751
29
2.8
30
80
8
91
19
22
14
44
1.86
43405--43559
81
1.9
83
86
4
224
52
12
20
14
1.73
55995--56019
9
2.8
9
100
0
50
48
0
8
44
1.32
71940--71994
15
3.7
15
80
0
65
27
58
5
9
1.51
74531--74715
91
2.0
92
90
2
291
32
21
21
24
1.97
74698--74750
24
2.1
25
89
6
81
30
16
20
32
1.95
75756--75871
57
2.0
57
93
0
196
11
51
12
24
1.72
76759--76797
2
19.5
2
100
0
78
51
0
0
48
1.00
77513--77639
64
2.0
65
93
1
220
27
9
13
49
1.72
77794--77836
15
2.8
16
96
3
79
4
13
41
39
1.66
78645--78686
16
2.6
16
88
0
57
11
9
38
40
1.75
90300--90588
144
2.0
144
96
0
533
32
18
21
27
1.97
90557--90648
46
2.0
46
93
0
157
34
16
30
18
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92116--92159
21
2.1
21
83
8
54
18
31
9
40
1.81
92360--92432
33
2.2
33
90
4
112
10
27
42
19
1.84
93766--93801
2
17.5
2
94
5
63
47
2
0
50
1.15
93910--94039
22
5.5
22
81
13
152
37
6
8
47
1.59
93900--94055
26
6.3
26
84
12
213
37
6
7
48
1.57
93910--94055
48
3.1
47
94
1
247
37
6
7
48
1.57
95762--95811
16
3.1
16
100
0
100
46
18
24
12
1.82
97929--97955
2
13.5
2
100
0
54
48
0
0
51
1.00
99467--99507
21
2.0
21
95
0
73
21
46
4
26
1.72
99594--99619
10
2.6
10
100
0
52
30
30
0
38
1.58
99656--99723
26
2.6
26
90
0
109
54
10
1
33
1.43
99775--99811
19
2.0
18
89
5
56
72
0
0
27
0.84
99775--99811
9
4.0
9
89
3
56
72
0
0
27
0.84
99999--100039
21
2.0
21
90
0
64
31
9
43
14
1.78
102720--102798
37
2.1
38
88
4
115
36
20
8
34
1.84
105285--105363
37
2.1
38
88
4
115
36
18
7
36
1.80
109533--110419
147
6.0
145
79
6
813
32
20
18
27
1.97
109625--110419
441
1.8
441
81
6
991
31
20
19
27
1.97
117846--118313
154
3.0
154
97
2
868
36
10
7
45
1.67
118252--118333
42
2.0
42
97
0
155
28
12
8
51
1.68
123509--123534
1
26.0
1
100
0
52
100
0
0
0
0.00

Tables:   1

The End!