Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013265.1 Corchorus capsularis cultivar CVL-1 contig13286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116718

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8718--8743
2
13.0
2
100
0
52
50
0
0
50
1.00
8873--8916
2
22.0
2
81
9
54
50
4
0
45
1.22
9334--9385
22
2.4
22
100
0
104
50
3
9
36
1.54
9651--9690
19
2.0
20
85
4
55
50
10
2
37
1.50
12523--12567
3
15.0
3
90
0
72
28
33
0
37
1.58
15900--15950
24
2.1
24
85
0
66
15
25
25
33
1.95
15924--16013
30
2.9
31
83
6
96
15
27
23
33
1.95
18321--18365
16
2.9
16
76
3
56
60
8
4
26
1.46
25376--25457
2
41.5
2
97
2
157
50
0
50
0
1.00
42226--42258
13
2.5
13
100
0
66
6
27
21
45
1.75
42251--42277
12
2.2
12
100
0
54
14
25
7
51
1.68
42696--42729
6
5.7
6
100
0
68
17
52
29
0
1.45
47034--47097
32
2.0
31
88
8
94
23
9
14
53
1.69
47152--47201
25
2.0
25
96
0
91
48
16
14
22
1.81
48978--49031
28
1.9
28
88
7
83
37
3
18
40
1.69
55437--55481
2
22.5
2
100
0
90
51
48
0
0
1.00
57383--57498
57
2.0
57
98
0
223
27
21
24
26
1.99
61990--62047
28
2.1
28
90
0
89
37
3
18
39
1.68
77016--77073
31
1.9
30
86
10
82
53
6
0
39
1.28
79384--79413
13
2.3
13
100
0
60
16
16
13
53
1.73
81327--81379
1
53.0
1
100
0
106
100
0
0
0
0.00
83594--83692
31
3.2
31
80
1
108
20
8
33
38
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85751--85796
17
2.7
17
93
0
74
28
30
13
28
1.94
90584--90638
25
2.5
20
72
25
56
30
14
10
43
1.80
90593--90643
25
2.0
25
100
0
102
31
15
7
45
1.75
94092--94121
15
2.0
15
100
0
60
60
6
13
20
1.55
109491--109522
14
2.1
16
88
11
50
12
9
9
68
1.39
116661--116708
3
16.0
3
95
0
87
0
31
0
68
0.90

Tables:   1

The End!