Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013266.1 Corchorus capsularis cultivar CVL-1 contig13287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70115

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2354--2423
3
23.7
3
81
13
74
37
0
2
60
1.12
6010--6109
31
3.3
31
72
16
109
37
17
20
26
1.93
5992--6081
29
3.1
28
70
17
92
31
18
20
30
1.96
5973--6109
60
2.3
60
93
0
229
37
17
17
27
1.92
6153--6270
60
2.0
60
88
6
177
30
19
15
34
1.93
6153--6284
60
2.2
60
85
9
171
29
20
14
35
1.92
6230--6335
52
2.1
51
87
5
162
32
20
15
32
1.93
7861--7924
31
2.1
31
87
0
92
32
20
23
23
1.98
9768--9839
29
2.4
29
81
6
83
47
18
16
18
1.83
10599--10636
8
4.8
8
90
0
58
2
7
47
42
1.46
10724--10800
2
43.5
2
69
23
57
50
2
1
45
1.23
10722--10805
34
2.5
32
79
14
91
50
2
1
46
1.22
20313--20376
30
2.1
30
85
0
83
32
18
12
35
1.89
27741--27820
41
2.1
37
84
11
99
30
10
25
35
1.88
33344--33458
39
2.9
39
88
2
160
16
23
33
26
1.96
33407--33599
102
2.0
100
83
8
243
18
19
33
27
1.96
41495--41580
39
2.1
42
85
6
115
13
20
29
36
1.92
44534--44570
18
2.1
18
89
0
56
10
24
21
43
1.84
52729--52828
42
2.4
42
77
9
114
14
23
27
36
1.93
55815--55839
2
12.5
2
100
0
50
48
0
0
52
1.00
57164--57193
6
5.0
6
91
0
51
16
36
0
46
1.47
66985--67018
17
2.1
17
89
10
54
26
0
5
67
1.13

Tables:   1

The End!