genome.fa.s13269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013269.1 Corchorus capsularis cultivar CVL-1 contig13290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97095

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21039--21234	97	2.0	97	100	0	392	40	11	15	32	1.83
22350--22411	33	1.9	33	87	12	94	32	22	16	29	1.95
22235--22756	136	3.9	134	80	9	546	26	17	13	42	1.87
22234--22756	267	1.9	269	82	6	659	26	17	13	42	1.87
32311--32382	16	4.3	16	74	10	72	37	16	5	40	1.72
32363--32403	21	2.0	21	85	0	55	39	14	4	41	1.67
32306--32433	56	2.4	56	81	6	149	38	15	6	39	1.73
32329--32648	100	3.3	100	85	7	348	37	17	7	37	1.79
32385--32469	43	2.0	43	88	0	125	37	16	8	37	1.79
32489--32788	43	7.0	43	84	13	393	37	18	7	36	1.80
32329--32788	86	5.0	97	80	14	452	37	18	7	36	1.79
32484--32834	43	9.0	37	75	15	231	37	18	7	36	1.79
32702--32838	56	2.5	55	93	5	228	38	16	7	37	1.76
32779--32818	21	1.9	21	89	0	62	40	15	2	42	1.60
36971--37043	29	2.6	28	87	10	96	42	28	13	15	1.85
43795--43835	15	2.7	15	92	0	64	46	12	21	19	1.82
49178--49263	42	2.0	42	93	0	145	27	44	22	5	1.75
56989--57035	24	1.9	25	86	4	69	19	19	2	59	1.48
57208--57241	7	4.9	7	85	0	50	17	23	2	55	1.55
57194--57300	22	5.0	22	78	6	130	22	16	5	55	1.62
57194--57300	43	2.5	42	90	1	169	22	16	5	55	1.62
57378--57443	7	9.4	7	79	0	60	18	18	6	57	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57376--57425	14	3.6	14	83	0	73	18	22	4	56	1.58
57194--57450	21	12.1	21	72	12	125	19	19	5	56	1.60
57445--57505	31	2.0	31	90	0	95	22	16	8	52	1.70
60469--60498	15	2.0	15	93	0	51	36	13	20	30	1.90
62895--63060	80	2.1	81	97	1	316	47	7	9	35	1.64
64288--64329	13	3.4	13	87	12	70	21	0	7	71	1.09
64548--64596	21	2.3	21	85	0	62	34	22	6	36	1.79
68006--68102	21	4.8	21	76	7	94	34	11	22	31	1.90
68006--68103	40	2.5	40	96	0	178	34	11	22	31	1.89
68006--68103	19	4.9	19	79	7	106	34	11	22	31	1.89
68357--68492	16	8.6	16	74	15	106	33	37	19	10	1.85
68402--68492	31	2.9	31	82	12	98	31	35	20	12	1.90
68598--68637	21	1.9	21	89	0	62	32	7	5	55	1.50
68597--68644	21	2.3	21	81	0	60	31	6	4	58	1.42
71914--72030	50	2.6	41	72	21	108	44	9	6	39	1.63
72171--72195	12	2.1	12	100	0	50	36	0	40	24	1.55
72687--72743	16	3.5	16	81	13	80	42	24	5	28	1.76
72679--72743	33	2.0	33	96	0	121	40	24	7	27	1.82
72679--72728	16	3.0	17	77	16	59	40	24	8	28	1.83
72747--72827	31	2.7	30	86	3	126	29	20	20	28	1.98
74335--74741	88	4.6	88	85	6	475	32	15	22	28	1.95
74808--74894	29	3.0	29	84	0	111	29	14	18	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74897--74982	35	2.5	35	94	0	145	31	16	29	23	1.96
74988--75064	39	2.0	40	94	2	138	23	9	25	41	1.84
75079--75138	5	10.8	6	84	8	58	0	3	15	81	0.81
75086--75149	11	6.1	10	80	12	67	0	1	18	79	0.81
75098--75137	16	2.6	16	92	4	64	0	0	17	82	0.67
75086--75149	5	12.2	5	82	11	67	0	1	18	79	0.81
78688--79066	179	2.1	182	89	5	579	34	11	13	39	1.82
84020--84056	19	2.0	18	89	5	56	40	8	21	29	1.82
85782--85806	2	12.5	2	100	0	50	48	0	0	52	1.00
88058--88721	35	19.7	35	79	12	671	38	10	18	32	1.85
88164--88255	28	3.0	28	78	19	112	39	10	16	33	1.83
88092--88721	99	6.3	99	88	6	921	38	10	18	33	1.85
88563--88629	31	2.2	31	86	0	89	40	8	22	28	1.84
88326--88689	137	2.7	136	84	7	440	38	10	18	32	1.84
88623--88678	17	3.2	17	71	14	60	39	14	14	32	1.86
92918--92946	2	14.5	2	100	0	58	48	0	0	51	1.00
93209--93236	5	5.6	5	100	0	56	82	0	0	17	0.68
94010--94047	6	6.3	6	82	11	51	84	0	15	0	0.63
94009--94041	13	2.5	13	95	5	57	84	0	15	0	0.61
95199--95333	71	1.9	72	86	4	193	18	16	26	38	1.92
95986--96012	12	2.2	12	100	0	54	33	22	0	44	1.53

Tables:   1

The End!