Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013270.1 Corchorus capsularis cultivar CVL-1 contig13291, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28112

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
580--613
15
2.3
15
89
0
50
64
2
20
11
1.39
2146--2773
35
18.7
35
78
14
573
38
10
17
32
1.85
2278--2773
99
5.0
99
85
7
650
38
10
17
32
1.85
2138--2773
134
4.7
135
82
9
682
38
10
17
32
1.85
2378--2772
66
5.8
66
76
12
322
38
10
18
31
1.85
5910--6022
40
2.8
40
85
4
129
34
17
7
39
1.79
7325--7361
20
1.9
20
94
5
67
10
8
13
67
1.41
9834--9892
24
2.3
25
91
8
93
45
5
13
35
1.66
20436--20502
23
3.2
23
60
24
56
31
17
8
41
1.81
21593--21653
26
2.3
26
81
15
72
57
18
9
14
1.64
22464--22528
22
2.8
24
86
6
89
49
13
15
21
1.79
22910--22942
17
2.1
16
88
11
50
30
0
6
63
1.18
27760--27808
21
2.2
22
92
7
82
18
0
18
63
1.32

Tables:   1

The End!