genome.fa.s13271.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013271.1 Corchorus capsularis cultivar CVL-1 contig13292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34727

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--47	15	2.5	15	83	4	51	28	7	7	56	1.55
4349--4552	22	9.3	22	72	12	98	34	10	16	39	1.82
4406--4497	46	2.0	45	85	6	123	36	14	13	35	1.84
4587--4726	22	6.4	21	74	11	104	38	7	17	36	1.78
4732--5002	22	12.4	22	70	13	125	42	9	14	32	1.79
4831--4959	66	2.0	66	81	6	154	41	10	14	33	1.79
5103--5644	22	24.7	22	65	15	99	39	8	14	37	1.78
5104--5263	44	3.6	43	75	12	137	41	8	15	35	1.78
5342--5400	23	2.6	23	83	2	75	37	13	11	37	1.82
7071--7124	14	3.6	15	74	16	58	35	16	9	38	1.81
6758--7462	35	20.7	34	81	8	744	33	19	9	37	1.85
10262--10302	3	13.7	3	89	0	64	65	2	0	31	1.05
12054--12096	11	3.9	11	90	0	68	46	6	4	41	1.51
12050--12096	22	2.1	22	96	0	85	46	6	4	42	1.48
12653--12724	29	2.4	29	81	2	81	43	23	11	22	1.85
13637--13661	3	8.3	3	100	0	50	36	0	0	64	0.94
16913--17349	49	8.6	49	79	7	356	35	15	26	22	1.94
16913--17349	152	2.9	150	79	7	402	35	15	26	22	1.94
16913--17347	102	4.3	102	87	2	531	34	15	26	22	1.95
17429--17497	24	2.9	24	75	10	61	17	8	4	69	1.31
20138--20187	25	2.0	25	96	0	91	58	16	18	8	1.62
20685--20781	33	3.1	32	66	23	80	34	19	25	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20696--20959	62	4.3	63	86	4	333	34	17	26	22	1.96
20842--20973	28	4.5	28	70	19	83	37	15	25	22	1.93
20997--21306	28	10.3	29	70	18	185	31	12	28	26	1.93
20995--21342	61	5.7	61	89	1	536	33	12	27	26	1.93
30321--30388	28	2.4	28	85	4	93	39	27	1	30	1.66
30906--30940	18	1.9	18	94	0	61	42	0	22	34	1.54
32295--32329	18	1.9	18	94	0	61	42	0	22	34	1.54
33678--33712	18	1.9	18	94	0	61	42	0	22	34	1.54
33681--33720	18	2.2	18	86	0	53	47	2	20	30	1.63

Tables:   1

The End!