Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013274.1 Corchorus capsularis cultivar CVL-1 contig13295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9144
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:7538 original size:15 final size:13

Alignment explanation


    Indices: 7504--7541  Score: 51
    Period size: 12  Copynumber: 2.8  Consensus size: 13

       7494 TGCTGAAACC

                         
       7504 AGACTTATTTGTG
          1 AGACTTATTTGTG

                         
       7517 A-ACTTATTTGTG
          1 AGACTTATTTGTG

                         
       7529 AATGACTTATTTG
          1 -A-GACTTATTTG

       7542 AGAGCAGAAC


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  12   11  0.50
  13    2  0.09
  15    9  0.41

ACGTcount: A:0.26, C:0.08, G:0.18, T:0.47


Consensus pattern (13 bp):   
AGACTTATTTGTG
Done.