genome.fa.s13277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013277.1 Corchorus capsularis cultivar CVL-1 contig13298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48093

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--400	50	7.9	50	85	2	520	38	17	29	15	1.90
8--400	149	2.6	150	86	1	493	38	17	29	15	1.90
375--438	32	2.0	32	90	0	101	28	20	23	28	1.99
545--621	40	1.9	40	89	0	118	36	19	32	11	1.88
1220--1419	51	4.0	51	79	10	139	36	15	6	42	1.72
1255--1440	102	1.8	101	83	5	250	37	13	6	42	1.70
1254--1450	51	3.9	50	79	8	193	36	13	6	43	1.70
12351--12439	46	1.9	46	100	0	178	15	39	26	17	1.90
12510--12562	21	2.6	21	87	3	72	7	32	32	28	1.85
21079--21131	21	2.6	21	87	3	72	7	32	32	28	1.85
23589--23631	22	2.0	22	95	0	77	27	20	9	41	1.83
23587--23653	22	3.0	22	84	4	73	31	16	10	41	1.82
23732--23795	29	2.2	29	83	5	76	35	23	12	28	1.91
24076--25002	22	40.3	22	66	17	200	36	16	9	37	1.81
24152--24329	46	3.9	46	89	2	254	39	20	8	31	1.83
24430--24850	213	2.0	210	88	7	627	37	13	9	39	1.77
24875--25008	42	3.1	43	81	5	146	36	19	10	33	1.86
26235--26304	29	2.4	29	100	0	140	38	5	5	50	1.50
30455--30509	18	3.0	18	80	17	60	32	0	10	56	1.34
30522--30563	14	3.0	14	76	13	50	38	0	7	54	1.28
30580--30629	18	2.8	18	78	0	55	30	0	12	58	1.34
30777--30820	18	2.4	18	88	7	63	36	6	47	9	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30781--30825	18	2.6	17	80	13	56	35	6	46	11	1.66
30795--30847	27	2.0	27	88	7	81	35	7	49	7	1.60
30777--30864	45	2.0	45	90	4	142	34	10	46	9	1.69
31017--31084	12	5.4	12	72	16	57	38	0	4	57	1.19
33468--33498	14	2.2	14	100	0	62	58	0	0	41	0.98
36266--36341	29	2.6	30	82	14	104	56	15	14	13	1.67
36702--36746	22	2.0	22	95	0	81	24	4	11	60	1.49
40816--40931	57	2.0	57	100	0	232	30	8	20	40	1.82
42094--42152	30	2.0	30	93	0	100	44	20	28	6	1.77
45179--45233	16	3.5	16	90	2	76	7	16	38	38	1.76
45223--45266	11	4.1	10	82	11	52	2	22	52	22	1.58
45223--45266	5	8.2	5	85	7	52	2	22	52	22	1.58
46029--46089	16	3.9	15	82	6	68	6	14	39	39	1.72
46283--46730	57	7.8	57	90	2	666	36	27	13	22	1.92
46283--46730	116	3.9	114	92	2	677	36	27	13	22	1.92
46283--46730	173	2.6	172	90	2	677	36	27	13	22	1.92
46459--46728	26	9.6	25	69	26	145	37	27	13	21	1.91
47240--47268	12	2.5	12	94	5	51	65	6	6	20	1.40

Tables:   1

The End!