Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013280.1 Corchorus capsularis cultivar CVL-1 contig13301, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8942
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:8401 original size:13 final size:13

Alignment explanation


    Indices: 8383--8439  Score: 71
    Period size: 14  Copynumber: 4.3  Consensus size: 13

       8373 CAAGATGCAT

                       * 
       8383 TTTTCAAAAATCG
          1 TTTTCAAAAATGG

                       *  
       8396 TTTTCAATAAAAGG
          1 TTTTCAA-AAATGG

                          
       8410 TTTTCAAAAATGGG
          1 TTTTCAAAAAT-GG

                         
       8424 TTTTCAAAAA-GG
          1 TTTTCAAAAATGG

                
       8436 TTTT
          1 TTTT

       8440 GATTCTTTTT


Statistics
Matches: 39,  Mismatches: 3, Indels: 5
        0.83            0.06        0.11

Matches are distributed among these distances:
  12    6  0.15
  13   10  0.26
  14   23  0.59

ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40


Consensus pattern (13 bp):   
TTTTCAAAAATGG

Done.