Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013283.1 Corchorus capsularis cultivar CVL-1 contig13304, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41027

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2071--2227
77
2.0
77
97
0
296
18
22
33
25
1.96
5245--5347
50
2.1
49
96
1
188
60
0
4
34
1.18
5282--5355
38
1.9
37
81
10
87
62
0
4
33
1.14
5379--5431
25
2.1
25
96
0
97
26
16
33
22
1.96
5432--5560
64
2.0
64
95
0
231
34
13
17
33
1.90
6847--6922
38
2.0
38
92
2
127
44
15
13
26
1.83
9100--9140
21
2.0
21
85
9
57
9
21
12
56
1.65
10372--10431
21
2.9
21
85
7
86
48
0
0
51
1.00
10392--10467
15
4.9
15
68
23
50
47
2
0
50
1.15
10423--10493
11
6.2
11
72
18
56
49
4
0
46
1.21
16111--16140
3
10.0
3
92
0
51
66
3
0
30
1.07
31719--31745
2
13.5
2
100
0
54
48
0
0
51
1.00
32415--32495
33
2.5
33
97
0
153
41
9
16
32
1.81
32490--32556
31
2.2
31
88
0
98
59
11
10
17
1.60
32739--32802
28
2.3
28
86
0
83
29
29
10
29
1.91
33096--33508
156
2.6
157
81
7
502
34
19
15
30
1.93
35718--35750
17
1.9
17
93
0
57
66
0
3
30
1.06
36908--36958
27
2.0
26
81
11
61
25
0
35
39
1.56

Tables:   1

The End!