Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013285.1 Corchorus capsularis cultivar CVL-1 contig13306, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3790
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:1484 original size:15 final size:16

Alignment explanation


    Indices: 1452--1485  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1442 AAAGAAGAAT

                 *          
       1452 TAAAATTAAATCTAAC
          1 TAAAAGTAAATCTAAC

                            
       1468 TAAAAGTAAAT-TAAC
          1 TAAAAGTAAATCTAAC

               
       1483 TAA
          1 TAA

       1486 GAAAGCAATC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.59, C:0.09, G:0.03, T:0.29


Consensus pattern (16 bp):   
TAAAAGTAAATCTAAC

Found at i:2799 original size:19 final size:18

Alignment explanation


    Indices: 2766--2801  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       2756 TTGAAATAAT

                              
       2766 TCTTCAATGATCTTCAAA
          1 TCTTCAATGATCTTCAAA

                     *        
       2784 TCTTCAAATTATCTTCAA
          1 TCTTC-AATGATCTTCAA

       2802 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAA
Done.