Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001329.1 Corchorus capsularis cultivar CVL-1 contig01329, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8573
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34


Found at i:8272 original size:21 final size:22

Alignment explanation


    Indices: 8228--8273  Score: 74
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       8218 CAATAGGGTG

                                  
       8228 TTGCTAAACACCGTCCCAATTT
          1 TTGCTAAACACCGTCCCAATTT

                         *    *   
       8250 TTGCTAAACACCGCCCCATTTT
          1 TTGCTAAACACCGTCCCAATTT

              
       8272 TT
          1 TT

       8274 ACACTTTTGA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.24, C:0.33, G:0.09, T:0.35


Consensus pattern (22 bp):   
TTGCTAAACACCGTCCCAATTT
Done.