Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013290.1 Corchorus capsularis cultivar CVL-1 contig13311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21944

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1217--1241
12
2.1
12
100
0
50
32
8
16
44
1.76
1459--1510
22
2.3
22
83
9
61
11
23
44
21
1.84
4029--4098
27
2.6
27
83
0
68
35
41
8
14
1.76
4297--4372
16
5.2
14
70
25
59
53
3
2
39
1.33
4420--4474
13
4.2
13
77
11
58
63
3
0
32
1.12
4517--4596
32
2.5
31
80
6
97
17
36
36
10
1.83
4537--4612
32
2.4
32
88
0
107
14
36
35
13
1.85
4706--4745
20
2.0
20
95
0
71
27
20
5
47
1.70
4905--4929
13
1.9
13
100
0
50
44
0
32
24
1.54
5144--5197
16
3.4
16
78
0
63
12
18
33
35
1.89
7992--8088
33
2.9
33
95
0
167
20
40
29
9
1.84
7992--8132
33
4.3
33
88
1
160
21
41
26
9
1.83
8971--9014
23
1.9
23
95
0
79
38
15
4
40
1.68
8971--9035
23
2.7
23
85
7
76
41
13
6
38
1.70
9245--9303
22
2.6
22
80
20
77
66
5
11
16
1.41
10880--10904
12
2.1
12
100
0
50
24
32
0
44
1.54
11757--11801
19
2.2
21
84
11
67
75
0
24
0
0.80
11749--11817
36
1.9
36
85
11
97
76
0
20
2
0.91
13373--13406
13
2.6
13
90
0
59
82
2
14
0
0.79

Tables:   1

The End!