Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013291.1 Corchorus capsularis cultivar CVL-1 contig13312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24005

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3530--3577
20
2.3
20
82
3
60
16
8
8
66
1.42
9199--9367
93
1.9
89
84
9
227
29
12
21
36
1.90
11005--11301
112
2.7
112
86
5
413
21
26
18
33
1.96
11028--11287
57
4.6
59
77
15
273
22
26
18
32
1.97
11032--11301
55
4.8
59
75
15
257
22
27
17
32
1.96
12123--12299
58
3.1
58
95
0
318
18
22
19
40
1.92
15075--15243
93
1.9
89
86
9
245
29
13
21
36
1.91
16284--16321
13
2.6
16
84
16
55
26
0
26
47
1.52
20818--20844
11
2.5
11
100
0
54
44
7
7
40
1.60
21134--21164
16
1.9
16
93
0
53
54
19
6
19
1.65
21839--21932
22
4.2
21
67
24
50
28
23
19
28
1.98
21820--21967
67
2.2
67
91
0
233
27
25
22
24
2.00
22368--22469
27
3.8
27
84
2
134
18
16
25
39
1.91
22710--22759
26
1.9
26
87
0
73
32
14
8
46
1.73

Tables:   1

The End!