Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013293.1 Corchorus capsularis cultivar CVL-1 contig13314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43425

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1610--1650
2
21.0
2
90
5
66
46
0
0
53
1.00
4874--4912
20
1.9
21
94
5
71
61
7
0
30
1.24
4919--5063
74
2.0
74
94
0
254
40
8
29
20
1.83
10916--11026
16
6.9
15
79
10
107
30
37
23
8
1.84
10916--11026
32
3.5
31
88
2
150
30
37
23
8
1.84
10916--11026
48
2.3
47
79
11
118
30
37
23
8
1.84
12198--12300
16
6.5
16
84
8
122
33
38
21
5
1.77
12198--12300
32
3.3
31
85
8
136
33
38
21
5
1.77
12213--12298
31
2.7
32
89
5
131
34
39
19
5
1.76
35969--36000
2
16.0
2
100
0
64
50
0
0
50
1.00
42414--42777
62
5.8
60
74
11
227
33
14
25
26
1.94
42342--42778
124
3.4
125
79
6
368
33
15
24
26
1.95
42546--43070
65
8.0
65
74
11
367
34
15
22
26
1.94
43261--43338
27
2.9
27
86
0
102
15
16
25
42
1.87

Tables:   1

The End!