Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013297.1 Corchorus capsularis cultivar CVL-1 contig13318, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6946
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26


Found at i:6845 original size:27 final size:27

Alignment explanation


    Indices: 6813--6884  Score: 99
    Period size: 27  Copynumber: 2.7  Consensus size: 27

       6803 GGTCGTCCAA

                                 *     
       6813 GGGTATTTTGGTCATTTTCGCGCCCAG
          1 GGGTATTTTGGTCATTTTCGCACCCAG

                               *  *    
       6840 GGGTATTTTGGTCATTTTCTCATCCAG
          1 GGGTATTTTGGTCATTTTCGCACCCAG

               *        *     
       6867 GGGCATTTTGGTAATTTT
          1 GGGTATTTTGGTCATTTT

       6885 TACACTCGGG


Statistics
Matches: 40,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  27   40  1.00

ACGTcount: A:0.14, C:0.17, G:0.26, T:0.43


Consensus pattern (27 bp):   
GGGTATTTTGGTCATTTTCGCACCCAG
Done.