Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013301.1 Corchorus capsularis cultivar CVL-1 contig13322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21494

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2017--2055
20
2.0
20
89
0
60
30
2
12
53
1.52
3127--3151
13
1.9
13
100
0
50
44
8
8
40
1.63
8760--8802
12
3.5
12
79
14
52
34
4
18
41
1.71
8758--8809
25
2.0
26
92
3
88
40
3
17
38
1.68
8760--8821
25
2.4
25
86
5
79
38
6
16
38
1.74
9191--9227
19
1.9
19
88
0
56
70
0
29
0
0.88
9577--9607
13
2.3
14
94
5
55
80
0
19
0
0.71
9577--9625
14
3.5
14
83
10
55
73
0
24
2
0.94
9566--9610
14
3.1
14
81
15
56
77
0
22
0
0.76
10230--10290
29
2.1
29
96
0
113
39
18
11
31
1.86
10533--10758
69
3.3
70
81
5
271
25
28
19
27
1.98
10875--11058
47
3.9
47
89
1
278
21
23
20
34
1.96
10875--11058
95
1.9
94
91
1
296
21
23
20
34
1.96
14539--14572
16
2.1
16
100
0
68
32
32
11
23
1.91

Tables:   1

The End!