genome.fa.s13303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013303.1 Corchorus capsularis cultivar CVL-1 contig13324, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75796

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2182--2206	12	2.1	12	100	0	50	12	40	16	32	1.84
13889--13998	32	3.4	32	82	5	141	39	35	9	16	1.80
13949--14011	17	3.9	16	72	12	56	39	41	9	9	1.70
14082--14115	2	18.0	2	88	11	54	50	0	0	50	1.00
14273--14301	6	4.8	6	100	0	58	17	0	0	82	0.66
15485--15904	210	2.0	210	99	0	831	42	7	32	17	1.77
16845--16978	53	2.5	53	84	8	184	38	29	12	19	1.89
16933--17034	30	3.4	30	76	14	93	40	29	10	19	1.86
28579--28725	53	2.8	53	84	9	192	38	28	15	17	1.90
31891--31979	44	2.0	44	84	0	115	35	28	10	25	1.88
37247--37275	13	2.1	14	93	6	51	48	10	20	20	1.79
42700--42737	20	1.9	20	88	0	58	31	21	23	23	1.98
42749--42826	22	3.4	21	70	16	66	21	19	30	28	1.97
42722--42830	47	2.3	47	93	0	182	25	19	26	28	1.99
42969--43381	69	6.0	69	91	2	616	28	15	28	27	1.96
42969--43381	137	3.0	138	91	2	634	28	15	28	27	1.96
42969--43381	206	2.0	207	89	3	627	28	15	28	27	1.96
43289--43567	93	3.0	93	94	0	468	31	13	26	27	1.94
43177--43656	162	3.0	155	75	11	498	30	13	27	28	1.95
43475--43656	69	2.6	69	91	0	292	30	13	26	29	1.94
44166--44316	50	3.0	48	89	7	230	37	11	16	34	1.84
44590--44647	11	5.0	11	85	12	55	1	18	0	79	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44600--44647	17	2.8	17	81	15	62	0	18	0	81	0.70
44590--44647	23	2.5	23	83	10	66	1	18	0	79	0.82
44641--44672	14	2.4	14	94	5	57	6	18	0	75	1.01
44628--44672	13	3.4	14	82	14	51	4	17	0	77	0.92
44592--44659	28	2.4	29	80	11	79	2	19	0	77	0.89
45368--45465	45	2.2	44	92	3	169	38	21	8	31	1.83
45471--45515	19	2.4	18	85	7	54	2	17	0	80	0.82
45483--45516	11	3.0	11	91	4	50	2	11	0	85	0.71
45502--45559	8	6.8	8	75	13	53	13	13	0	72	1.13
45491--45525	12	3.0	12	91	4	54	8	8	0	82	0.83
45501--45560	9	6.8	9	75	11	61	13	13	0	73	1.10
45522--45560	17	2.2	18	86	4	53	12	15	0	71	1.14
47014--47049	19	1.9	18	88	5	54	41	5	22	30	1.76
47947--47996	20	2.5	20	90	0	82	36	20	14	30	1.91
47595--48360	388	2.0	388	96	0	1424	27	16	16	39	1.90
48715--48739	13	1.9	13	100	0	50	16	8	4	72	1.24
48715--48757	22	1.9	23	90	4	70	13	11	4	69	1.33
52127--52152	11	2.4	11	100	0	52	7	7	0	84	0.77
52772--52890	42	3.0	40	80	8	127	32	16	7	42	1.77
62774--62871	37	2.7	37	91	1	162	29	22	8	39	1.83
62860--62941	37	2.4	35	84	10	98	23	25	12	39	1.89
62926--63029	36	2.9	34	83	11	113	23	12	15	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62931--63050	36	3.4	35	78	10	109	24	15	14	46	1.82
63036--63258	41	5.5	41	89	4	346	19	19	13	47	1.83
63036--63258	80	2.8	81	91	4	371	19	19	13	47	1.83
63036--63258	121	1.8	121	96	0	410	19	19	13	47	1.83
63300--63771	39	11.5	39	84	9	498	26	18	11	43	1.83
63288--63809	83	6.4	82	89	6	638	26	18	10	44	1.82
63446--63846	41	9.9	41	80	13	251	26	17	10	44	1.81
63338--63835	122	4.0	123	80	12	417	26	18	11	43	1.83
68944--68991	24	2.0	25	91	4	80	52	8	18	20	1.71

Tables:   1

The End!