Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013305.1 Corchorus capsularis cultivar CVL-1 contig13326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58119

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6345--6483
33
4.2
32
83
7
136
10
28
41
20
1.84
6463--6504
21
2.0
21
95
0
75
16
33
30
19
1.94
9466--9495
15
1.9
15
93
6
51
0
23
0
76
0.78
16014--16076
23
2.9
22
78
4
65
38
12
3
46
1.58
16034--16076
22
2.0
22
86
4
61
41
9
4
44
1.57
17081--17111
16
1.9
16
93
0
53
70
6
9
12
1.31
19483--19541
25
2.5
24
86
5
75
33
23
0
42
1.55
19551--19621
26
2.8
26
82
2
99
57
9
1
30
1.40
22142--22185
22
2.0
22
81
0
52
25
18
25
31
1.97
22215--22282
22
3.1
22
84
0
91
22
20
29
27
1.98
25188--25255
27
2.5
28
83
7
95
29
13
23
33
1.93
29667--29733
27
2.5
28
80
7
84
31
11
20
35
1.89
33313--33356
22
2.0
22
82
8
54
25
22
22
29
1.99
33309--33411
52
2.0
52
90
0
161
25
28
20
26
1.99
36310--36363
12
4.6
12
75
13
58
77
3
9
9
1.09
36322--36379
22
2.6
23
83
2
73
77
5
10
6
1.11
37218--37266
21
2.3
21
85
0
62
28
28
32
10
1.90
44486--44519
11
3.2
10
84
15
50
50
17
2
29
1.61
46560--46629
29
2.4
29
97
2
133
18
27
44
10
1.81
50354--50387
11
3.2
10
84
15
50
50
17
2
29
1.61
51750--51926
55
3.2
55
76
12
227
33
18
19
28
1.95
52998--53028
16
2.0
15
93
6
53
38
6
22
32
1.80

Tables:   1

The End!