genome.fa.s13308.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013308.1 Corchorus capsularis cultivar CVL-1 contig13329, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77906

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321--353	15	2.3	15	89	5	50	45	0	3	51	1.16
1736--1810	24	3.1	24	74	0	87	37	17	30	14	1.90
8223--8311	45	2.0	45	95	0	160	33	20	21	24	1.97
9203--9250	21	2.6	17	80	12	51	10	6	29	54	1.59
9805--9851	22	2.3	19	75	25	51	46	27	17	8	1.76
10843--11196	35	10.1	35	87	1	503	37	9	16	36	1.82
14642--14673	14	2.4	14	94	5	57	71	0	15	12	1.14
14604--14738	68	2.0	65	88	4	198	61	5	20	11	1.51
15926--16025	52	1.9	52	91	0	164	19	10	16	55	1.68
20271--20358	46	1.9	46	95	0	158	38	15	11	34	1.84
21532--21635	39	2.6	40	90	4	158	30	18	8	42	1.80
22165--22222	17	3.2	17	73	17	55	51	15	6	25	1.68
25415--25794	58	6.4	59	78	7	285	25	23	14	37	1.92
25436--26069	117	5.2	117	76	10	338	24	23	14	37	1.92
25417--26069	62	10.8	60	78	12	459	24	23	13	37	1.92
25769--26013	36	7.4	35	66	23	140	25	23	12	38	1.90
25677--25942	123	2.2	122	88	3	399	24	24	13	37	1.92
25893--26013	35	3.4	35	84	6	147	26	20	12	40	1.88
26116--26160	23	2.0	23	86	0	63	26	24	11	37	1.89
26060--26423	85	4.3	85	90	0	568	27	24	12	35	1.91
26528--26657	61	2.1	62	81	7	149	29	21	11	37	1.89
26935--27197	64	4.0	64	81	5	278	26	22	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26881--27199	64	4.8	65	78	8	236	26	22	12	37	1.90
30691--30751	30	2.1	27	88	8	86	9	9	24	55	1.63
30688--30756	15	4.6	15	71	20	63	8	11	24	55	1.64
32059--32106	21	2.3	20	89	3	69	18	12	2	66	1.33
32158--32190	17	1.9	17	93	0	57	39	3	21	36	1.69
36583--36696	44	2.7	42	86	6	144	32	15	6	45	1.71
36671--36738	30	2.3	29	79	5	73	36	11	8	42	1.73
37791--37848	14	4.3	13	81	12	64	39	13	6	39	1.72
40622--40765	43	3.4	43	87	5	206	30	15	6	47	1.72
40622--40778	87	1.8	83	86	5	224	33	14	6	45	1.70
47477--47518	20	2.0	21	86	4	59	33	21	16	28	1.95
47825--47857	1	33.0	1	93	0	57	96	0	0	0	0.04
55303--55376	34	2.1	36	87	5	107	22	12	14	50	1.77
56835--56904	30	2.3	30	95	0	122	71	17	2	8	1.23
62940--62978	19	2.1	18	85	4	51	51	5	35	7	1.53
64113--64150	18	2.1	18	85	9	51	44	0	5	50	1.24
64613--64778	31	5.5	30	68	16	128	26	18	19	34	1.95
64613--64774	60	2.7	60	93	0	261	25	18	19	35	1.95
65607--65657	24	2.1	25	85	3	68	17	5	1	74	1.11
68967--69001	2	17.5	2	100	0	70	51	0	0	48	1.00
74300--74335	2	18.5	2	88	5	56	50	0	2	47	1.15
74914--74950	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75695--75735	16	2.6	16	92	0	73	4	12	41	41	1.64
75725--75778	6	9.5	6	82	11	69	3	18	46	31	1.67
75725--75776	22	2.3	22	96	3	95	3	17	48	30	1.65
76529--76570	16	2.6	16	88	0	57	9	11	38	40	1.75
77254--77312	25	2.5	24	88	5	84	35	22	0	42	1.54
77322--77389	26	2.6	26	88	0	100	54	8	1	35	1.41
77322--77365	15	3.2	15	72	24	51	54	9	0	36	1.32
77444--77474	12	2.5	13	94	5	55	67	0	0	32	0.91
77541--77573	6	5.8	6	89	10	52	0	12	0	87	0.53
77541--77573	11	2.9	11	95	4	57	0	12	0	87	0.53
77542--77573	17	1.9	16	93	6	55	0	9	0	90	0.45
77853--77906	1	54.0	1	84	0	72	0	7	0	92	0.38
77856--77906	8	6.6	8	97	2	88	0	7	0	92	0.40

Tables:   1

The End!