Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013311.1 Corchorus capsularis cultivar CVL-1 contig13332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96112

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1427--1458
16
2.0
16
100
0
64
25
25
6
43
1.77
9394--9449
19
2.9
19
76
10
53
73
5
21
0
1.03
11632--11700
22
3.3
22
64
15
65
39
8
11
40
1.72
11625--11701
40
1.9
40
100
0
154
40
9
10
40
1.71
15738--15763
6
4.3
6
100
0
52
34
15
15
34
1.89
16067--16091
7
3.6
7
100
0
50
16
16
0
68
1.22
16121--16155
2
17.5
2
100
0
70
51
0
0
48
1.00
16983--17047
30
2.2
30
88
5
96
49
1
4
44
1.32
16976--17053
30
2.5
32
77
16
90
48
1
5
44
1.32
19167--19217
20
2.7
18
80
16
59
1
3
17
76
1.03
21355--21416
30
2.1
30
90
0
97
8
25
43
22
1.80
21371--21459
42
2.1
42
81
4
108
10
26
39
23
1.87
24895--24995
46
2.2
46
100
0
202
23
26
10
38
1.88
27963--28054
42
2.2
42
84
0
112
7
23
42
26
1.81
28853--28902
4
12.5
4
95
0
64
50
8
0
42
1.32
29876--29918
18
2.4
17
77
11
50
9
2
16
72
1.21
32827--32860
3
11.3
3
100
0
68
32
0
0
67
0.91
34574--34599
6
4.3
6
100
0
52
30
0
0
69
0.89
34721--34758
18
2.2
17
90
4
58
44
0
2
52
1.14
36392--36438
21
2.2
22
88
3
69
53
12
2
31
1.51
37735--37778
3
14.7
3
100
0
88
34
0
0
65
0.93
38625--38649
7
3.6
7
100
0
50
16
16
24
44
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45484--45530
22
2.1
22
92
0
76
42
4
8
44
1.54
45484--45526
11
3.9
11
87
0
59
41
4
9
44
1.57
46839--46902
32
2.0
32
84
6
85
40
14
7
37
1.74
49247--49281
18
1.9
18
88
0
52
2
48
2
45
1.32
54582--54610
14
2.1
14
100
0
58
44
6
20
27
1.77
60888--60928
10
4.1
10
87
0
55
4
12
34
48
1.62
64595--64628
16
2.2
16
89
5
52
29
2
8
58
1.43
68415--68473
28
2.1
29
93
3
102
32
16
11
38
1.86
68897--68937
22
1.9
21
90
5
64
65
9
2
21
1.34
73000--73080
41
2.0
41
87
0
117
29
14
17
38
1.90
73182--73246
3
22.0
3
90
3
105
64
1
0
33
1.03
78952--79021
35
2.0
35
91
0
113
30
20
18
31
1.96
81517--81590
2
42.0
2
70
24
60
52
1
0
45
1.09
81518--81594
12
6.9
12
77
15
69
53
1
0
45
1.08
81517--81595
21
3.6
22
83
8
99
51
1
0
46
1.08
83431--83479
21
2.3
22
85
3
64
42
22
26
8
1.81
84067--84096
14
2.1
14
93
0
51
66
10
20
3
1.35
88373--88401
15
1.9
15
100
0
58
0
13
0
86
0.58
93673--93721
23
2.1
23
100
0
98
20
30
0
48
1.50
93683--93732
23
2.2
23
85
0
64
28
24
0
48
1.52
93779--93838
27
2.2
27
81
3
66
15
26
3
55
1.56
93902--93971
21
3.3
21
72
9
70
25
21
4
48
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93953--94019
35
1.9
35
87
6
100
25
16
4
53
1.61
93988--94058
7
9.7
7
77
8
61
19
19
1
59
1.46
93995--94085
22
4.2
22
81
6
114
20
19
4
54
1.61
93974--94043
29
2.4
29
77
15
74
21
18
2
57
1.54
93988--94085
44
2.3
43
89
5
144
20
19
4
56
1.58
94047--94120
35
2.1
37
84
5
98
17
22
6
52
1.68
94112--94211
40
2.4
41
84
12
134
23
21
6
50
1.70
94112--94230
40
2.9
41
82
8
111
21
22
5
49
1.71
94428--94525
38
2.5
39
75
8
101
25
22
5
46
1.72

Tables:   1

The End!