Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013312.1 Corchorus capsularis cultivar CVL-1 contig13333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11939
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33


Found at i:10148 original size:19 final size:19

Alignment explanation


    Indices: 10109--10148  Score: 53
    Period size: 19  Copynumber: 2.1  Consensus size: 19

      10099 AAGGTCAAAA

                      *  *  *  
      10109 ATTGTTATTAGTTTTTTTT
          1 ATTGTTATTACTTATTATT

                               
      10128 ATTGTTATTACTTATTATT
          1 ATTGTTATTACTTATTATT

              
      10147 AT
          1 AT

      10149 CATTTTTTAA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.23, C:0.03, G:0.07, T:0.68


Consensus pattern (19 bp):   
ATTGTTATTACTTATTATT
Done.