Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013313.1 Corchorus capsularis cultivar CVL-1 contig13334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94598

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5279--5319
2
20.5
2
100
0
82
51
0
0
48
1.00
18549--18596
6
7.2
6
78
21
51
33
4
2
60
1.27
18561--18607
17
3.1
17
71
28
59
34
8
4
53
1.51
18549--18607
29
2.0
29
100
0
118
33
6
3
55
1.43
29207--29271
22
3.2
22
62
20
59
12
16
15
55
1.69
29202--29277
39
1.9
39
97
0
143
11
17
17
53
1.72
30718--30818
31
3.3
30
75
8
80
23
19
19
36
1.95
39100--39164
25
2.5
26
85
7
96
46
1
1
50
1.20
40969--41030
23
2.7
22
79
13
72
25
0
4
69
1.08
44116--44205
3
30.0
3
93
0
144
4
0
28
66
1.11
45906--45948
18
2.4
18
92
0
68
53
6
6
32
1.55
47250--47285
4
9.0
4
93
0
63
52
25
0
22
1.47
58847--58873
6
4.5
6
100
0
54
33
51
0
14
1.43
64167--64253
3
28.7
3
90
2
129
65
3
0
31
1.09
66439--66541
22
4.7
22
79
2
84
34
16
13
34
1.88
66555--66605
24
2.1
24
100
0
102
39
19
3
37
1.70
66659--66729
37
2.0
36
91
5
117
47
16
15
19
1.82
85788--86041
139
1.8
139
96
1
476
40
7
9
42
1.65
93775--93856
22
3.7
23
73
4
78
43
8
7
40
1.63
94410--94491
22
3.7
23
73
4
78
43
8
7
40
1.63

Tables:   1

The End!