Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013314.1 Corchorus capsularis cultivar CVL-1 contig13335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29982

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
666--898
70
3.2
71
85
10
310
49
0
12
37
1.45
660--898
78
3.2
77
90
7
359
49
0
12
37
1.44
2201--2251
25
2.0
25
96
0
93
47
15
23
13
1.82
3496--3752
142
1.8
142
86
0
379
24
16
17
41
1.89
12040--12069
9
3.2
9
90
9
51
50
10
0
40
1.36
12040--12071
10
3.3
10
95
4
57
50
9
0
40
1.35
16233--16351
53
2.2
53
86
8
161
48
27
9
14
1.74
16679--16711
3
11.0
3
93
0
57
66
0
30
3
1.06
16777--16815
15
2.7
15
88
7
55
0
5
10
84
0.76
16786--16824
15
2.4
16
87
8
53
5
2
10
82
0.93
17818--18012
65
3.0
65
90
0
284
34
18
15
30
1.93
19146--19212
30
2.2
28
78
14
71
44
4
0
50
1.22
22011--22051
20
2.0
20
90
0
64
46
21
0
31
1.52
22000--22137
73
1.9
72
89
4
215
47
15
7
29
1.73
22087--22124
20
1.9
20
94
0
67
50
18
0
31
1.47
22347--22402
16
3.5
16
70
0
58
8
23
35
32
1.86
26795--26845
24
2.1
24
81
0
57
56
7
0
35
1.28

Tables:   1

The End!