Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013318.1 Corchorus capsularis cultivar CVL-1 contig13339, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5096
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:3801 original size:50 final size:50

Alignment explanation


    Indices: 3743--3845  Score: 152
    Period size: 50  Copynumber: 2.1  Consensus size: 50

       3733 AAACAAGAAG

                            *   *                             
       3743 TTTTATAATAAGATTGTATTTCATTTATGAGTCCAAGATCAAAATTTGCT
          1 TTTTATAATAAGATTGCATTCCATTTATGAGTCCAAGATCAAAATTTGCT

                       *          *   *      *                
       3793 TTTTATAATAATATTGCATTCCGTTTGTGAGTCTAAGATCAAAATTTGCT
          1 TTTTATAATAAGATTGCATTCCATTTATGAGTCCAAGATCAAAATTTGCT

               
       3843 TTT
          1 TTT

       3846 CAAAGGGCAT


Statistics
Matches: 47,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  50   47  1.00

ACGTcount: A:0.31, C:0.11, G:0.13, T:0.46


Consensus pattern (50 bp):   
TTTTATAATAAGATTGCATTCCATTTATGAGTCCAAGATCAAAATTTGCT
Done.