Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013321.1 Corchorus capsularis cultivar CVL-1 contig13342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8896

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3207--3344
45
3.1
45
91
0
222
38
7
18
35
1.80
3699--3747
23
2.1
24
88
11
75
63
0
20
16
1.31
4058--4096
16
2.5
16
87
4
53
87
10
2
0
0.65
4062--4095
11
2.9
12
91
8
52
88
8
2
0
0.62
4392--4492
48
2.1
50
84
3
134
30
12
12
43
1.81
4952--5200
70
3.6
69
79
6
263
26
26
18
28
1.98
5392--5542
14
10.5
13
71
19
51
29
18
4
47
1.69
5384--5765
58
6.6
58
74
17
307
29
19
4
46
1.70
5479--5542
22
2.9
22
86
9
69
31
20
3
45
1.67
5503--5564
22
2.8
22
95
0
106
32
20
4
41
1.74
5554--5805
14
17.5
14
67
17
101
29
19
4
46
1.70
5582--5803
84
2.6
84
85
8
279
28
18
5
47
1.70
5688--5804
22
5.3
21
73
15
87
29
19
4
47
1.69
5634--5751
34
3.4
34
82
6
137
27
17
5
49
1.68
5366--5805
50
8.7
49
75
16
178
29
19
4
46
1.70
5774--6085
58
5.4
58
86
1
394
22
22
11
43
1.85
5774--6083
114
2.7
116
82
2
363
22
22
10
43
1.84
6112--6177
22
3.0
22
88
4
96
30
24
3
42
1.70
6201--6235
16
2.2
16
89
0
52
20
22
8
48
1.76
6120--6321
96
2.1
97
85
2
273
30
20
5
42
1.76
6224--6266
22
2.0
22
85
0
59
34
20
4
39
1.74
6138--6345
96
2.2
96
81
6
251
29
21
6
41
1.79

Tables:   1

The End!