Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013325.1 Corchorus capsularis cultivar CVL-1 contig13346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77966

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--106
32
3.2
32
87
4
143
14
38
37
9
1.80
97--184
33
2.7
33
82
10
108
12
30
39
17
1.86
10875--10927
19
2.7
19
79
5
52
45
5
11
37
1.64
12498--12529
3
10.7
3
93
0
55
0
37
28
34
1.57
19010--19043
10
3.2
10
88
12
50
64
0
0
35
0.94
26385--26426
6
7.0
6
100
0
84
0
33
50
16
1.46
26775--26816
21
2.1
21
91
8
70
45
0
0
54
0.99
30495--30521
13
2.1
13
100
0
54
48
29
7
14
1.71
31070--31110
2
20.5
2
85
9
57
46
4
0
48
1.23
31252--31410
79
2.0
79
98
0
309
28
11
23
36
1.90
46121--46153
2
16.5
2
87
12
50
45
0
3
51
1.16
47042--47134
45
2.2
44
82
7
111
43
18
3
35
1.66
49270--49319
23
2.2
23
85
0
64
44
10
14
32
1.78
49409--49492
25
3.0
27
83
13
100
44
4
1
50
1.31
52934--52964
2
15.5
2
100
0
62
51
0
0
48
1.00
54390--54424
17
2.0
18
88
5
54
48
8
11
31
1.69
54390--54424
18
2.0
17
88
5
52
48
8
11
31
1.69
62666--62699
3
11.3
3
100
0
68
32
0
0
67
0.91
62979--63024
21
2.2
21
96
0
83
41
10
15
32
1.82
64716--64778
28
2.2
28
83
8
74
38
15
1
44
1.57
65797--65830
5
6.8
5
96
0
59
85
0
14
0
0.60
71012--71069
17
3.4
17
73
20
57
22
0
17
60
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70992--71087
34
2.9
32
73
14
97
22
1
15
60
1.41
72928--73030
45
2.3
45
96
0
188
32
14
31
22
1.94
77674--77792
60
2.0
60
98
0
229
31
15
21
31
1.94

Tables:   1

The End!