Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013331.1 Corchorus capsularis cultivar CVL-1 contig13352, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15019

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3800--3849
21
2.4
21
86
0
73
58
2
36
4
1.29
3791--3852
21
2.7
24
73
14
67
58
1
37
3
1.24
9449--9518
13
4.8
13
72
24
59
40
8
10
41
1.69
9439--9504
33
2.0
34
93
3
116
37
9
15
37
1.79
9482--9518
14
2.7
14
95
4
67
40
8
5
45
1.56
9847--9886
18
2.2
18
86
0
53
77
15
0
7
0.98
10210--10259
8
6.2
8
83
6
66
76
0
12
12
1.04
10211--10259
16
3.1
16
86
13
75
75
0
12
12
1.05
10209--10254
23
2.0
23
91
4
74
78
0
10
10
0.97
10204--10259
8
6.7
9
78
17
59
75
0
12
12
1.06
11235--11289
24
2.3
23
75
6
56
30
21
1
45
1.62
11267--11384
37
2.8
45
71
19
126
27
21
2
48
1.63
11356--11398
21
2.1
20
86
4
59
23
18
2
55
1.54
11333--11635
8
38.9
8
64
17
77
27
22
5
44
1.74
11252--11411
82
2.0
82
85
0
221
26
20
2
50
1.60
11371--11442
24
3.0
24
85
0
90
26
19
2
51
1.60
11470--11614
14
10.0
14
70
15
75
30
21
3
44
1.68
11557--11623
14
4.4
16
76
14
70
28
19
4
47
1.68
11645--11690
14
3.1
15
81
15
51
30
17
6
45
1.73
11743--11798
14
3.8
15
73
19
55
30
16
5
48
1.68
11847--11994
8
19.1
8
68
18
82
29
21
3
45
1.68
11436--12236
380
2.1
372
95
1
1440
27
21
7
43
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11886--12015
22
5.9
22
77
5
111
31
22
3
42
1.71
12025--12070
14
3.1
15
81
15
51
30
17
6
45
1.73
11470--11822
22
16.0
22
71
11
167
28
20
5
45
1.74
12129--12161
14
2.4
14
94
0
57
33
21
0
45
1.52

Tables:   1

The End!