Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013333.1 Corchorus capsularis cultivar CVL-1 contig13354, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21790

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2586--2621
19
1.9
18
88
5
54
33
22
2
41
1.68
4107--4176
24
3.0
24
78
19
78
47
15
12
24
1.81
14253--14311
25
2.5
24
89
10
86
33
22
1
42
1.63
14321--14388
26
2.6
26
92
0
109
54
11
0
33
1.37
14321--14388
15
5.1
14
70
26
58
54
11
0
33
1.37
14702--14746
20
2.1
22
80
12
58
37
8
35
17
1.81
14703--14746
21
2.1
21
87
4
63
36
9
36
18
1.82
15685--15709
2
12.5
2
100
0
50
52
0
0
48
1.00
17442--17503
16
3.8
16
76
6
61
74
0
22
3
0.96
17471--17503
11
2.8
12
86
9
50
72
0
27
0
0.85
20699--20989
145
2.0
145
100
0
582
27
13
24
34
1.93

Tables:   1

The End!