Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013336.1 Corchorus capsularis cultivar CVL-1 contig13357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16405

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1901--1975
31
2.4
32
84
2
89
41
38
10
9
1.72
1932--1975
16
2.8
16
92
0
79
38
40
15
4
1.68
3292--3348
15
3.6
15
75
17
53
40
36
15
7
1.75
4759--4883
66
2.0
61
90
7
196
32
19
14
34
1.92
4820--5166
166
2.1
168
82
1
419
29
14
15
39
1.88
6929--6971
2
20.0
2
81
13
50
44
0
6
48
1.29
6929--6970
9
4.8
9
91
2
68
45
0
7
47
1.30
9757--10248
50
10.0
48
82
8
487
35
17
28
18
1.93
9757--10242
148
3.3
146
84
6
554
35
17
28
18
1.94
10288--10399
40
2.8
40
77
9
120
36
19
29
14
1.91
10255--10399
80
1.8
77
84
10
195
36
20
29
13
1.91
10251--10577
41
8.0
40
74
9
171
38
18
27
14
1.90
10332--10576
41
5.9
41
76
8
199
37
19
27
14
1.91
14937--15171
89
2.6
91
87
4
352
30
21
11
36
1.88
16027--16069
21
2.0
22
86
4
61
23
37
4
34
1.76

Tables:   1

The End!