Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013339.1 Corchorus capsularis cultivar CVL-1 contig13360, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41961

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3197--3221
13
1.9
13
100
0
50
12
0
0
88
0.53
4253--4318
30
2.2
30
83
5
80
10
28
37
22
1.88
4685--4715
15
2.1
15
93
0
53
32
3
16
48
1.62
5528--5588
16
3.9
15
81
10
68
18
4
32
44
1.71
5528--5562
15
2.2
16
95
5
63
17
2
34
45
1.63
5533--5608
32
2.4
32
79
0
89
14
6
35
43
1.71
5762--5818
16
3.6
16
85
0
69
8
10
24
56
1.61
5748--5821
16
4.7
16
77
8
62
9
8
27
55
1.60
5795--5830
16
2.2
16
90
0
54
8
8
25
58
1.55
6071--6215
49
3.0
47
81
6
166
46
5
19
28
1.72
13385--13429
21
2.1
21
83
0
54
11
35
33
20
1.88
15584--15682
35
2.9
34
80
10
112
19
22
3
55
1.56
15593--15682
34
2.6
35
85
3
110
18
21
3
56
1.56
15711--15757
19
2.4
19
78
3
58
14
25
2
57
1.49
15725--15843
47
2.5
48
87
5
163
16
19
1
62
1.42
15640--15782
67
2.1
67
83
2
198
15
23
2
58
1.50
15839--16129
42
6.8
42
79
9
250
19
20
6
53
1.66
15832--16134
21
14.0
23
74
16
213
19
20
5
54
1.64
16117--16169
27
2.0
27
85
3
72
16
24
7
50
1.71
25584--25612
13
2.1
14
93
6
51
20
27
10
41
1.85
37714--37820
33
3.2
33
78
5
92
9
27
38
25
1.86

Tables:   1

The End!