Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013343.1 Corchorus capsularis cultivar CVL-1 contig13364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29898

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1518--1562
13
3.5
13
87
3
65
20
13
11
55
1.68
1559--1585
6
4.5
6
100
0
54
29
0
14
55
1.40
12862--12903
20
2.1
20
95
0
75
16
14
28
40
1.88
15429--15482
28
1.9
28
85
7
74
16
12
27
42
1.85
19121--20107
437
2.3
439
83
3
1236
42
15
14
27
1.86
20833--21010
95
1.9
95
83
4
234
36
28
7
26
1.85
20929--21888
217
4.5
217
87
4
1349
37
20
7
34
1.82
20929--21888
424
2.2
432
88
4
1390
37
20
7
34
1.82
23074--23144
27
2.5
28
90
4
108
42
18
16
22
1.89
23539--23661
33
3.7
33
80
8
133
24
41
26
7
1.81
24565--24598
8
4.1
8
85
7
50
58
14
2
23
1.50
24671--24706
9
3.9
9
89
7
54
83
0
0
16
0.65

Tables:   1

The End!