Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013346.1 Corchorus capsularis cultivar CVL-1 contig13367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32444

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
674--720
22
2.2
22
85
11
62
6
12
2
78
1.02
4482--4529
21
2.2
21
85
7
60
37
2
6
54
1.38
6768--7265
119
4.2
119
87
1
696
16
25
26
32
1.96
6715--7265
236
2.4
237
85
3
744
16
24
27
32
1.96
7601--7646
24
1.9
24
95
0
83
6
28
23
41
1.79
7791--8045
106
2.4
106
93
0
431
23
20
22
33
1.97
11173--11268
16
6.0
16
80
0
111
50
32
12
5
1.62
11179--11268
32
2.8
32
96
0
162
51
32
12
4
1.59
11426--11483
16
3.7
15
82
11
71
43
32
5
18
1.73
11406--11510
32
3.2
32
81
5
104
42
33
6
17
1.75
11405--11526
16
7.4
17
69
10
65
43
33
7
15
1.75
21830--21885
28
2.0
28
92
0
94
37
8
14
39
1.77
22543--22613
34
2.3
31
77
18
76
38
4
11
46
1.59
26260--26285
2
13.0
2
100
0
52
50
0
0
50
1.00
29569--29654
40
2.2
40
95
0
154
36
17
27
18
1.94

Tables:   1

The End!