Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013347.1 Corchorus capsularis cultivar CVL-1 contig13368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35043

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1657--1687
3
10.3
3
100
0
62
35
0
64
0
0.94
2869--2895
2
13.5
2
100
0
54
48
0
0
51
1.00
2996--3027
15
2.1
15
100
0
64
28
9
37
25
1.87
5467--5576
54
2.0
54
98
0
211
47
10
21
20
1.79
7632--7720
46
1.9
46
86
4
126
38
16
5
39
1.73
12213--12253
3
13.0
3
90
10
64
31
0
0
68
0.90
14070--14124
23
2.4
23
87
0
74
21
34
36
7
1.81
14094--14167
33
2.2
33
86
9
98
21
41
28
8
1.81
24306--24332
2
13.5
2
100
0
54
48
0
0
51
1.00
25302--25473
22
7.8
22
67
9
73
34
13
11
40
1.81
26079--26127
8
5.6
9
90
7
66
18
0
12
69
1.19
26080--26128
17
2.9
16
87
9
62
18
0
14
67
1.23
26080--26128
25
1.9
25
91
4
80
18
0
14
67
1.23
32148--32263
33
3.7
30
80
10
124
39
18
10
31
1.84
32148--32296
66
2.3
63
76
12
142
39
18
10
32
1.84
32299--32407
33
3.3
33
82
5
157
42
21
11
24
1.86
32274--32416
66
2.2
66
96
0
232
41
20
10
27
1.84
33782--33812
5
6.4
5
92
7
55
19
0
0
80
0.71

Tables:   1

The End!